Putrefaction, Fermentation and Synthesis by Soil Microorganisms

Putrefaction, Fermentation and Synthesis by Soil Microorganisms

Putrefaction, Fermentation and Synthesis by Soil Microorganisms

Posted By
Ashok Kumar, Asst. Manager En-Vision Enviro Engineers Pvt. Ltd. Surat-395002, Gujarat (India).

Soil microorganisms can be classified into decomposer and synthetic microorganisms. The decomposer microorganisms are subdivided into groups that perform oxidative and fermentative decomposition. The fermentative group is further divided into useful fermentation (simple fermentation) and harmful fermentation (putrefaction). The synthetic microorganisms can be sub-divided into groups having the physiological abilities to fix atmospheric nitrogen into amino acids and/or carbon dioxide into simple organic molecules through photosynthesis.

Fermentation is an anaerobic process by which facultative microorganisms e.g. yeasts, transform complex organic molecules e.g. carbohydrates, into simple organic compounds that often can be absorbed directly by plants. Fermentation yields a relatively small amount of energy compared with aerobic decomposition of the same substrate by the same group of microorganisms. Aerobic decomposition results in complete oxidation of a substrate and the release of large amounts of energy, gas and heat with carbon dioxide and water as the end products. Putrefaction is the process by which facultative heterotrophic microorganisms decompose proteins anaerobically, yielding malodorous incompletely oxidized, metabolites e.g. ammonia, mercaptans and indole, that are often toxic to plants and animals.

The term synthesis as used here refers to the biosynthetic capacity of certain microorganisms to derive metabolic energy by fixing atmospheric nitrogen and/or carbon dioxide. In this context we refer to these as synthetic microorganisms and if they should become a predominant part of the soil microflora, then the soil would be termed a synthetic soil. Nitrogen-fixing microorganisms are highly diverse, ranging from free-living autotrophic bacteria of the genus Azotobacter to symbiotic, heterotrophic bacteria of the genus Rhizobium and blue-green algae, all of which function aerobically. Photosynthetic microorganisms fix atmospheric carbon dioxide in a manner similar to that of green plants. They are also highly diverse, ranging from blue-green algae to green algae that perform complete photosynthesis aerobically to photosynthetic bacteria which perform incomplete photosynthesis anaerobically.

(Bacteria Credit: Image courtesy of Society for General Microbiology)

The processes of putrefaction, fermentation and synthesis proceed simultaneously according to the appropriate types and numbers of microorganisms that are present in the soil. The impact on soil quality attributes and related soil properties is determined by the dominant process. The production of organic substances by microorganisms results from the intake of positive ions, while decomposition serves to release these positive ions. Hydrogen ions play a pivotal role in these processes. A problem occurs when hydrogen ions do not recombine with oxygen to form water but are utilized to produce methane, hydrogen sulfide, ammonia, mercaptans and other highly reduced putrefactive substances most of which are toxic to plants and produce malodors. If a soil is able to absorb the excess hydrogen ions during periods of soil anaerobiosis and if synthetic microorganisms such as photosynthetic bacteria are present, they will utilize these putrefactive substances and produce useful substrates from them which helps to maintain a healthy and productive soil.

The photosynthetic bacteria, which perform incomplete photosynthesis anaerobically, are highly desirable, beneficial soil microorganisms because they are able to detoxify soils by transforming reduced, putrefactive substances such as hydrogen sulfide into useful substrates. This helps to ensure efficient utilization of organic matter and to improve soil fertility. Photosynthesis involves the photo-catalyzed splitting of water which yields molecular oxygen as a by-product. Thus, these microorganisms help to provide a vital source of oxygen to plant roots. Reduced compounds such as methane and hydrogen sulfide are often produced when organic materials are decomposed under anaerobic conditions. These compounds are toxic and can greatly suppress the activities of nitrogen-fixing microorganisms. However, if photosynthetic bacteria are present in the soil, oxygen deficiencies are not likely to occur. Thus, nitrogen-fixing microorganisms, coexisting in the soil with photosynthetic bacteria, can function effectively in fixing atmospheric nitrogen even under anaerobic conditions.

Photosynthetic bacteria can also fix-nitrogen during photosynthesis. Moreover, it has been shown that, when they coexist, in soil with species of Azotobacter, their ability to fix nitrogen is enhanced. This is an example of a synthetic soil. It also suggests that by recognizing the role, function and mutual compatibility of these two bacteria and utilizing them effectively to their full potential, soils can be induced to a greater synthetic capacity. Perhaps the most effective synthetic soil system results from the enhancement of zymogenic and synthetic microorganisms; this allows fermentation to become dominant over putrefaction and useful synthetic processes to proceed. In sustainable, low-input cropping systems the natural roles of microorganisms in maintaining soil fertility and biocontrol of plant pathogens may be more important than in conventional agriculture where their significance has been marginalised by high inputs of agrochemicals.

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